PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G267800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ZF-HD
Protein Properties Length: 355aa    MW: 38438.1 Da    PI: 7.219
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G267800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.44.1e-3467123459
         ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                         v+YkeClkNhAa+lGgha+DGCgEfmps+++  +++++lkCaACgCHRnFHRr++e+
  Prupe.3G267800.1.p  67 VTYKECLKNHAATLGGHALDGCGEFMPSPTAIpTDPTSLKCAACGCHRNFHRRDPED 123
                         79****************************999********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.6E-2867121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2367120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-3168120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.90969120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.12E-18198271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-29205271IPR009057Homeodomain-like
TIGRFAMsTIGR015652.9E-24210267IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDITPSITTT TNNTTSTKSP EADSETPTRI QPAKPLSFSN GVLKRHNPHP HHHHLHHHNI  60
PITPVIVTYK ECLKNHAATL GGHALDGCGE FMPSPTAIPT DPTSLKCAAC GCHRNFHRRD  120
PEDPMPPSSA AATTHVIEYQ PHHRHHPPPP THGGNRSPNS ASPPPISSSY YPSAPHMLLA  180
LSTAHENALG GPNNNHSPQP PIVSPSPNAR KRFRTKFSQE QKDKMYQFAE RVGWKMQKRD  240
EEIVQEFCNE INVDKGVLKV WMHNNKNTFA KRDVTNGSGG GLSGGVSRPN ILLEEAHNNG  300
NGNGNGNGNN NVDDENDEHN DDNNNSDMQN LNHYQGTDGG AAGHVGTNGS SSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-212112681875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230766.11e-169PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG08e-80ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLM5WSW11e-140M5WSW1_PRUPE; Uncharacterized protein
STRINGVIT_14s0108g00750.t012e-98(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-76homeobox protein 34